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| Enzymes | Tree(s) | Source |
| E2 | E2 Tree | Kraft, et al., 2005 [Paper link] |
| E3: F-Box | [Condensed] [Enlarged] [Enlarged E3_FBOX Tree] | |
| E3: Ring | E3_RING Tree | Stone,et al.,2005 [Paper link] |
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