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A Functional Genomics Database for the Ubiquitin/26S Proteasome Proteolytic Pathway

Funded by the National Science Foundation 2010 Program (MCB-0115870)

Master Gene List

Ubiquitin [Get all UBQ from database]
AGI Database Gene Homozygous Alternate  
Number Links Name T-DNA Names  
      KNock-out    
At3g52590 [TAIR] [PlantsUBQ] UBQ1      
At2g36170 [TAIR] [PlantsUBQ] UBQ2      
At5g03240 [TAIR] [PlantsUBQ] UBQ3 Yes    
At5g20620 [TAIR] [PlantsUBQ] UBQ4 Yes    
At3g62250 [TAIR] [PlantsUBQ] UBQ5      
At2g47110 [TAIR] [PlantsUBQ] UBQ6      
At3g09790 [TAIR] [PlantsUBQ] UBQ8      
At5g37640 [TAIR] [PlantsUBQ] UBQ9      
At4g05320 [TAIR] [PlantsUBQ] UBQ10 Yes    
At4g05050 [TAIR] [PlantsUBQ] UBQ11 No    
At1g65350 [TAIR] [PlantsUBQ] UBQ13      
At4g02890 [TAIR] [PlantsUBQ] UBQ14 Yes    
At1g55060 [TAIR] [PlantsUBQ] UBQ12      
At1g31340 [TAIR] [PlantsUBQ] UBQ15      
NA NA   UBQ7      
At1g23410 [TAIR] [PlantsUBQ] UBQ5/6-like      
At2g17190 [TAIR] [PlantsUBQ] UBQ-like      
At2g17200 [TAIR] [PlantsUBQ] UBQ-like      
At1g53950 [TAIR] [PlantsUBQ] UBQ-like      
At1g53930 [TAIR] [PlantsUBQ] UBQ-like      
At5g24240 [TAIR] [PlantsUBQ] UBQ-like      
At1g64470 [TAIR] [PlantsUBQ] UBQ-like      
At5g09340 [TAIR] [PlantsUBQ] UBQ-like      
At1g53980 [TAIR] [PlantsUBQ] UBQ-like      
E1 - Ubiquitin Activating Enzyme [Get all E1 from database]
AGI Database Gene Homozygous Alternate  
Number Links Name T-DNA Names  
      KNock-out    
At2g30110 [TAIR] [PlantsUBQ] UBA1      
At5g06460 [TAIR] [PlantsUBQ] UBA2      
E2 - Ubiquitin conjugating Enzyme [Get all E2 from database] (last update on June 20, 2005)
AGI Database Gene  Grp # Active Active Comments GenBank
Number Links UBC   in TE in Ub   Accession #
At1g14400 [TAIR] [PlantsUBQ] 1 III yes yes Conj. in vitro to lysozyme with rabbit E3alpha; DQ027016
              Conj. to co-purifying proteins with   
              rabbit E3alpha; E3-in; E3-dep  
At2g02760 [TAIR] [PlantsUBQ] 2 III nd yes E3-in DQ027017
At5g62540 [TAIR] [PlantsUBQ] 3 III nd yes E3-in DQ027018
At5g41340 [TAIR] [PlantsUBQ] 4 IV yes yes E3-in, E3-dep DQ027019
At1g63800 [TAIR] [PlantsUBQ] 5 IV nd yes E3-in DQ027020
At2g46030 [TAIR] [PlantsUBQ] 6 IV nd yes E3-in DQ027021
At5g59300 [TAIR] [PlantsUBQ] 7 V yes nd    
At3g46460 [TAIR] [PlantsUBQ] 13 V yes nd   DQ027027
At3g55380 [TAIR] [PlantsUBQ] 14 V yes nd   DQ027028
At5g41700 [TAIR] [PlantsUBQ] 8 VI yes yes E3-dep DQ027022
At4g27960 [TAIR] [PlantsUBQ] 9 VI yes nd   DQ027023
At5g53300 [TAIR] [PlantsUBQ] 10 VI yes yes E3-dep DQ027024
At3g08690 [TAIR] [PlantsUBQ] 11 VI yes yes E3-dep DQ027025
At3g08700 [TAIR] [PlantsUBQ] 12 VI nd nd InsolubleX DQ027026
At1g64230 [TAIR] [PlantsUBQ] 28 VI yes yes E3-dep DQ027041
At2g16740 [TAIR] [PlantsUBQ] 29 VI nd yes E3-dep DQ027042
At5g56150 [TAIR] [PlantsUBQ] 30 VI nd yes E3-dep DQ027043
At1g45050 [TAIR] [PlantsUBQ] 15 VII yes No   DQ027029
At1g75440 [TAIR] [PlantsUBQ] 16 VII nd No   DQ027030
At4g36410 [TAIR] [PlantsUBQ] 17 VII nd No   DQ027031
At5g42990 [TAIR] [PlantsUBQ] 18 VII nd No   DQ027032
At3g20060 [TAIR] [PlantsUBQ] 19 VIII yes yes   DQ027033
At1g50490 [TAIR] [PlantsUBQ] 20 VIII nd nd E3-in DQ027034
At5g25760 [TAIR] [PlantsUBQ] 21 IX nd nd insolubleY DQ027035
At5g05080 [TAIR] [PlantsUBQ] 22 X nd yes E3-in DQ027036
At2g16920 [TAIR] [PlantsUBQ] 23 XI nd nd not cloned  
At2g33770 [TAIR] [PlantsUBQ] 24 XI nd nd insolubleY DQ027037
At3g15355 [TAIR] [PlantsUBQ] 25 XI nd nd insolubleY DQ027038
At1g53020 [TAIR] [PlantsUBQ] 26 XI nd nd   DQ027039
At5g50870 [TAIR] [PlantsUBQ] 27 XII yes yes E3-dep DQ027040
At1g36340 [TAIR] [PlantsUBQ] 31 XIII nd nd InsolubleX DQ027044
At3g17000 [TAIR] [PlantsUBQ] 32 XIV yes nd InsolubleZ DQ027045
At5g50430 [TAIR] [PlantsUBQ] 33 XIV nd nd InsolubleZ DQ027046
At1g17280 [TAIR] [PlantsUBQ] 34 XIV nd yes E3-dep, Z DQ027047
At1g78870 [TAIR] [PlantsUBQ] 35 XV nd yes E3-dep DQ027048
At1g16890 [TAIR] [PlantsUBQ] 36 XV yes yes E3-dep DQ027049
At3g24515 [TAIR] [PlantsUBQ] 37 XVI nd No   DQ027050
E3- Ubiquitin Protein Ligase
AGI Database F-Box Mutant or Alternate Tree
Number Links Sub T-DNA Names Reference
    Family KNock-out    
F-box Containing [Get all F-box from database]
At3g18320 [TAIR] [PlantsUBQ] A1     1
At3g44120 [TAIR] [PlantsUBQ] A1     2
At2g07160 [TAIR] [PlantsUBQ] A1     3
At3g19410 [TAIR] [PlantsUBQ] A1     4
At3g18980 [TAIR] [PlantsUBQ] A1     5
At3g25460 [TAIR] [PlantsUBQ] A1 Yes   6
At4g09870 [TAIR] [PlantsUBQ] A1     7
At3g49980 [TAIR] [PlantsUBQ] A1 Yes   8
At5g47300 [TAIR] [PlantsUBQ] A1     9
At1g25190a [TAIR] [PlantsUBQ] A1     10
At1g25160a [TAIR] [PlantsUBQ] A1     11
At1g25210a [TAIR] [PlantsUBQ] A1     12
At1g62270 [TAIR] [PlantsUBQ] A1     13
At3g17480 [TAIR] [PlantsUBQ] A1     14
At3g17490 [TAIR] [PlantsUBQ] A1 Yes   15
At3g17500 [TAIR] [PlantsUBQ] A1     16
At2g04920 [TAIR] [PlantsUBQ] A1     17
At3g22350 [TAIR] [PlantsUBQ] A1     18
At3g22730 [TAIR] [PlantsUBQ] A1     19
At3g22710 [TAIR] [PlantsUBQ] A1     20
At3g22700 [TAIR] [PlantsUBQ] A1 Yes   21
At3g22720 [TAIR] [PlantsUBQ] A1 Yes   22
At3g18910 [TAIR] [PlantsUBQ] A1 No   23
At3g18330 [TAIR] [PlantsUBQ] A1     24
At3g23260 [TAIR] [PlantsUBQ] A1     25
At4g10190 [TAIR] [PlantsUBQ] A1 No   26
At3g21170 [TAIR] [PlantsUBQ] A1 Yes   27
At3g21130 [TAIR] [PlantsUBQ] A1     28
At3g21120 [TAIR] [PlantsUBQ] A1 Yes   29
At1g11620 [TAIR] [PlantsUBQ] A1     30
At2g27520 [TAIR] [PlantsUBQ] A1 Yes   31
At3g17560 [TAIR] [PlantsUBQ] A1     32
At3g17280 [TAIR] [PlantsUBQ] A1 Yes   33
At3g17260 [TAIR] [PlantsUBQ] A1 Yes   34
At3g24700 [TAIR] [PlantsUBQ] A1     35
At3g17570 [TAIR] [PlantsUBQ] A1     36
At2g13140 [TAIR] [PlantsUBQ] A1     37
At3g17270 [TAIR] [PlantsUBQ] A1     38
At3g17530 [TAIR] [PlantsUBQ] A1 Yes   39
At3g17540 [TAIR] [PlantsUBQ] A1 Yes   40
At3g21410 [TAIR] [PlantsUBQ] A1     41
At3g22650 [TAIR] [PlantsUBQ] A1 Yes   42
At1g77650 [TAIR] [PlantsUBQ] A1 Yes   43
At3g10430 [TAIR] [PlantsUBQ] A1 Yes   44
At3g08750 [TAIR] [PlantsUBQ] A1 No   45
At4g04690 [TAIR] [PlantsUBQ] A1 No   46
At3g59610 [TAIR] [PlantsUBQ] A1     47
At1g58090 [TAIR] [PlantsUBQ] A1     48
At5g37040 [TAIR] [PlantsUBQ] A1     49
At2g14710 [TAIR] [PlantsUBQ] A1     50
At3g16580 [TAIR] [PlantsUBQ] A1     51
At1g47390 [TAIR] [PlantsUBQ] A1     52
At1g32430 [TAIR] [PlantsUBQ] A1     53
At3g16590 [TAIR] [PlantsUBQ] A1     54
At1g12170 [TAIR] [PlantsUBQ] A1 Yes   55
At1g12190 [TAIR] [PlantsUBQ] A1     56
At1g51290 [TAIR] [PlantsUBQ] A1     57
At1g51320 [TAIR] [PlantsUBQ] A1     58
At3g16555 [TAIR] [PlantsUBQ] A1     59
At3g51170 [TAIR] [PlantsUBQ] A1     60
At3g18340 [TAIR] [PlantsUBQ] A1     61
At3g44130 [TAIR] [PlantsUBQ] A1     62
At3g17710 [TAIR] [PlantsUBQ] A1     63
At2g17310 [TAIR] [PlantsUBQ] A1 Yes SON1 64
At1g59680