PlantsUBQ: 26S Proteasome Site

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PlantsUBQ - A Functional Genomics Database for the Ubiquitin/26S Proteasome Proteolytic Pathway in Plants
Funded by the National Science Foundation 2010 Program (MCB-0519970)

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2010 Project
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Master Gene List
    E1- Ubq activating
    E2 - Ubq conjugating
    E3 - FBox
    E3 - SKP1-like
    E3 - Cullin
    E3 - BTB
    E3 - HECT
    E3 - RING
    E3 - UBox
    E3 - DDB
    E3 - RBX1
    E3 - PHD
Published Results
Trees

About the Biology
    Ubiquitin
    E1- Ubq activating
    E2 - Ubq conjugating
    E3 - Protein Ligase

Other Projects
PlantsP
PlantsT
PKR

Contact Us

Welcome to PlantsUBQ!

Find proteins by name or keyword using Quick Search.
Browse our data in Master Gene List.
Learn about ubiquitin/26S proteasome pathway in About the Biology.

Click on a molecule to search for corresponding entries in PlantsUBQ

What's in a name?

Lophopyrum elongatum

crested-wheat lengthened out, elongated

Gledhill, David. The Names of Plants. 3rd Ed. University Press, Cambridge, 2002.

View all entries with user-contributed annotation
Review proposed annotations

News & Updates

07-14-08 TAIR8 release - updated all affected PlantsUBQ entries. search by keyword "arabidopsis-genome8" to see those entries.

05-25-07 TAIR7 release - updated all affected PlantsUBQ entries. search by keyword "arabidopsis-genome7" to see those entries.

04-05-07 Check out the new look of Master Gene List - sortable by AGI number, gene name, and more.

01-23-07 Enhanced ability to make custom motif diagrams - see any detail page

12-19-06 Added ability to search for proteins by molecular weight, see search page

12-15-06 Microarray data by organ distribution and age distribution are available for Arabadopsis genes on the detail page. More information can be found in the genevestigator database.

12-15-06 Link to TAIR stocks and strains added for valid Arabidopsis thaliana entries in the multiple results page and detail page.

11-17-06 Simple Motif Search added to the search page - find matching proteins from database for a user-defined regular expression or prosite pattern.

10-17-06 GeneGC link added to the advanced search page and RNA/DNA detail page. GC content of a DNA or RNA sequence can be calculated with a specified window size and a step size.

News Archive...

A distributed project investigating the biology of the 26S proteasome in Arabidopsis thaliana and other plants. This project made possible by the National Science Foundation Biological Databases and Infrastructure program (DBI-0217951), Plant Genome program (DBI-0217312), and 2010 program (MCB-0519970).

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.